STRINGSTRING
Neut_1924 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1924" - Cupin in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1924Cupin (113 aa)    
Predicted Functional Partners:
Neut_0347
Hypothetical protein (376 aa)
   
          0.708
Neut_1925
Hypothetical protein (256 aa)
              0.706
Neut_2174
Class III aminotransferase (462 aa)
   
          0.596
Neut_0416
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (397 aa)
   
          0.563
Neut_2169
Hypothetical protein (358 aa)
   
          0.558
Neut_1863
Hypothetical protein (200 aa)
   
          0.545
fliA
RNA polymerase subunit sigma 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes (236 aa)
   
          0.532
Neut_1926
P-type HAD superfamily ATPase (912 aa)
              0.466
Neut_0682
Methyltransferase type 11 (268 aa)
   
          0.451
Neut_0718
Hypothetical protein (433 aa)
   
          0.425
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha, N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha Koops et al. 2001, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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