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STRINGSTRING
Neut_1967 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1967" - PFAM: ATP dependent DNA ligase in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1967PFAM- ATP dependent DNA ligase; KEGG- neu-NE1884 possible homolog of eukaryotic DNA ligase III (233 aa)    
Predicted Functional Partners:
Neut_1965
KEGG- neu-NE1882 hypothetical protein (427 aa)
 
          0.967
Neut_1966
KEGG- neu-NE1883 hypothetical protein (176 aa)
              0.880
Neut_1968
PFAM- protein of unknown function DUF202; KEGG- neu-NE1885 DUF202 (124 aa)
 
          0.752
Neut_2062
KEGG- neu-NE0458 hypothetical protein (698 aa)
   
          0.652
queH
Epoxyqueuosine reductase QueH; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) (218 aa)
              0.556
Neut_2225
TIGRFAM- CRISPR-associated protein, NE0113 family; KEGG- neu-NE0113 hypothetical protein (376 aa)
   
          0.538
Neut_2220
TIGRFAM- CRISPR-associated RAMP protein, Csm5 family; KEGG- neu-NE0119 hypothetical protein (533 aa)
   
          0.504
Neut_2219
CRISPR-associated protein, Csm4 family; KEGG- neu-NE0120 hypothetical protein (322 aa)
   
          0.487
Neut_1447
KEGG- neu-NE1157 hypothetical protein (287 aa)
   
          0.486
Neut_2228
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (95 aa)
   
          0.482
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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