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STRINGSTRING
Neut_1987 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1987" - PFAM: electron transport protein SCO1/SenC in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1987PFAM- electron transport protein SCO1/SenC; KEGG- neu-NE0509 SCO1/SenC (204 aa)    
Predicted Functional Partners:
Neut_1988
KEGG- neu-NE0508 hypothetical protein (211 aa)
              0.846
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily (298 aa)
   
  0.815
Neut_1876
PFAM- electron transport protein SCO1/SenC; KEGG- neu-NE0682 SCO1/SenC (209 aa)
   
          0.712
Neut_2393
PFAM- cytochrome c oxidase assembly protein CtaG/Cox11; KEGG- neu-NE1015 putative cytochrome C oxidase assembly transmembrane protein (172 aa)
 
 
  0.608
ctaA
Heme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily (356 aa)
 
 
  0.573
Neut_1874
PFAM- cytochrome c oxidase, subunit II; KEGG- neu-NE0684 possible cytochrome-c oxidase chain II (174 aa)
 
 
  0.559
Neut_1986
KEGG- neu-NE0510 hypothetical protein (453 aa)
              0.550
Neut_0083
PFAM- protein of unknown function DUF461; KEGG- nha-Nham_2200 protein of unknown function DUF461 (164 aa)
 
          0.518
Neut_1875
PFAM- cytochrome c oxidase, subunit I; KEGG- neu-NE0683 cytochrome c oxidase, subunit I (492 aa)
 
   
  0.481
Neut_1110
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (201 aa)
   
   
  0.465
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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