• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Neut_2026 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2026" - PFAM: outer membrane chaperone Skp in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2026PFAM- outer membrane chaperone Skp (OmpH); KEGG- neu-NE1709 putative transmembrane protein; Belongs to the skp family (187 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (758 aa)
 
 
  0.964
Neut_2028
Zinc metalloprotease; TIGRFAM- putative membrane-associated zinc metalloprotease; PFAM- PDZ/DHR/GLGF domain protein; peptidase M50; KEGG- neu-NE1711 membrane-associated Zn-dependent proteases 1 (455 aa)
   
   
  0.871
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (147 aa)
   
 
  0.853
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids; Belongs to the RNase HII family (219 aa)
              0.817
Neut_2030
PFAM- phosphatidate cytidylyltransferase; KEGG- neu-NE1713 phosphatidate cytidylyltransferase; Belongs to the CDS family (275 aa)
              0.809
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP); Belongs to the DXR family (413 aa)
              0.809
frr
Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another (185 aa)
   
      0.805
Neut_2031
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids (263 aa)
              0.745
Neut_2508
PFAM- OmpA/MotB domain protein; KEGG- neu-NE2548 bacterial outer membrane protein; Belongs to the ompA family (231 aa)
 
 
  0.712
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP (237 aa)
   
        0.621
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (10%) [HD]