• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
lpxK protein (Nitrosomonas eutropha) - STRING interaction network
"lpxK" - Tetraacyldisaccharide 4'-kinase in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpxKTetraacyldisaccharide 4’-kinase; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA); In the C-terminal section; belongs to the UPF0434 family (396 aa)    
Predicted Functional Partners:
Neut_0435
PFAM- acylneuraminate cytidylyltransferase; KEGG- neu-NE1686 3-deoxy-manno-octulosonate cytidylyltransferase (252 aa)
   
  0.935
Neut_0728
TIGRFAM- DNA internalization-related competence protein ComEC/Rec2; PFAM- beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG- neu-NE2408 DNA internalization-related competence protein ComEC/Rec2 (799 aa)
       
  0.780
Neut_1203
PFAM- Biopolymer transport protein ExbD/TolR; KEGG- neu-NE0869 biopolymer transport protein ExbD/TolR (144 aa)
        0.752
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (369 aa)
   
   
  0.741
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (147 aa)
   
   
  0.734
Neut_0286
Cell division and transport-associated protein TolQ; PFAM- MotA/TolQ/ExbB proton channel; KEGG- neu-NE0215 MotA/TolQ/ExbB proton channel family; TC 2.C.1.2.1 (234 aa)
 
      0.732
Neut_0287
Cell division and transport-associated protein TolR; PFAM- Biopolymer transport protein ExbD/TolR; KEGG- neu-NE0216 biopolymer transport protein ExbD/TolR; TC 2.C.1.2.1 (138 aa)
 
        0.664
Neut_2109
KEGG- neu-NE2163 hypothetical protein (83 aa)
         
  0.621
Neut_1091
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (367 aa)
         
  0.580
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (758 aa)
 
          0.571
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (10%) [HD]