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Neut_2221 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2221" - KEGG: neu:NE0117 hypothetical protein in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2221KEGG- neu-NE0117 hypothetical protein (318 aa)    
Predicted Functional Partners:
Neut_2223
TIGRFAM- CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG- neu-NE0115 hypothetical protein (389 aa)
 
          0.963
Neut_2219
CRISPR-associated protein, Csm4 family; KEGG- neu-NE0120 hypothetical protein (322 aa)
 
        0.948
Neut_2220
TIGRFAM- CRISPR-associated RAMP protein, Csm5 family; KEGG- neu-NE0119 hypothetical protein (533 aa)
 
          0.948
Neut_2218
TIGRFAM- CRISPR-associated RAMP protein, Csm3 family; PFAM- protein of unknown function DUF324; KEGG- neu-NE0121 hypothetical protein (238 aa)
 
   
  0.941
Neut_2216
TIGRFAM- CRISPR-associated protein, Csm1 family; KEGG- neu-NE0123 hypothetical protein (872 aa)
 
   
  0.896
Neut_2225
TIGRFAM- CRISPR-associated protein, NE0113 family; KEGG- neu-NE0113 hypothetical protein (376 aa)
 
          0.864
Neut_2222
TIGRFAM- putative CRISPR-associated protein, VVA1548 family; KEGG- neu-NE0116 hypothetical protein (98 aa)
              0.854
Neut_2228
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (95 aa)
 
     
  0.793
Neut_0178
KEGG- neu-NE0494 hypothetical protein (111 aa)
   
          0.723
Neut_0906
KEGG- neu-NE1790 hypothetical protein (373 aa)
   
          0.680
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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