STRINGSTRING
orn protein (Nitrosomonas eutropha) - STRING interaction network
"orn" - Oligoribonuclease in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ornOligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (181 aa)    
Predicted Functional Partners:
Neut_2287
Ribosome small subunit-dependent GTPase A; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (309 aa)
   
   
  0.750
Neut_2291
Alpha-glucan phosphorylase (851 aa)
              0.735
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (245 aa)
   
     
  0.724
Neut_2289
Ste24 endopeptidase (422 aa)
              0.725
Neut_2288
Pterin-4-alpha-carbinolamine dehydratase (113 aa)
              0.725
Neut_2461
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (155 aa)
   
      0.610
Neut_0117
Single-stranded DNA-binding protein (133 aa)
   
      0.610
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA (144 aa)
   
     
  0.486
apaH
Diadenosine tetraphosphatase; Hydrolyzes diadenosine 5’,5’’’-P1,P4-tetraphosphate to yield ADP (266 aa)
   
          0.446
Neut_0145
Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (519 aa)
   
        0.441
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha, N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha Koops et al. 2001, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (10%) [HD]