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Neut_2303 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2303" - RNA polymerase sigma-54 factor in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Neut_2303RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (487 aa)    
Predicted Functional Partners:
Neut_0138
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM- response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART- AAA ATPase; KEGG- neu-NE0017 putative transcriptional regulator of two-component regulator protein (455 aa)
 
   
  0.954
Neut_2302
ABC transporter-related protein; PFAM- ABC transporter related; SMART- AAA ATPase; KEGG- neu-NE0063 ATPase component ABC-type (unclassified) transport system (240 aa)
 
   
  0.907
Neut_1621
PFAM- sigma-54 factor, interaction domain-containing protein; SMART- AAA ATPase; KEGG- gme-Gmet_0339 sigma54 specific transcriptional regulator with PAS sensor, fis family (366 aa)
 
     
  0.855
Neut_0136
Periplasmic sensor signal transduction histidine kinase; PFAM- ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG- neu-NE0015 sensory transduction histidine kinases (499 aa)
     
 
  0.818
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1404 aa)
   
 
 
  0.802
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane (183 aa)
   
        0.795
Neut_0747
Two component, sigma54 specific, transcriptional regulator, Fis family protein; PFAM- response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART- AAA ATPase; KEGG- neu-NE2081 sigma-54 dependent response regulator (437 aa)
 
     
  0.791
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (335 aa)
       
 
  0.775
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1359 aa)
       
 
  0.766
Neut_1416
Two component, sigma54 specific, transcriptional regulator, Fis family protein; PFAM- response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART- AAA ATPase; KEGG- neu-NE1124 response regulatory protein (452 aa)
 
     
  0.748
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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