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Neut_2304 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2304" - TIGRFAM: ribosomal subunit interface protein in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2304TIGRFAM- ribosomal subunit interface protein; PFAM- sigma 54 modulation protein/ribosomal protein S30EA; KEGG- neu-NE0061 sigma 54 modulation protein / S30EA ribosomal protein (111 aa)    
Predicted Functional Partners:
rpmD
PFAM- ribosomal protein L30; KEGG- neu-NE0419 ribosomal protein L30 (61 aa)
   
 
      0.833
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (138 aa)
     
 
  0.824
rpmH
PFAM- ribosomal protein L34; KEGG- neu-NE0390 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (44 aa)
     
 
  0.823
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (102 aa)
     
      0.816
rpsU
PFAM- ribosomal protein S21; KEGG- neu-NE0226 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (70 aa)
     
 
  0.734
Neut_2303
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (487 aa)
   
   
  0.728
Neut_2305
PTS IIA-like nitrogen-regulatory protein PtsN; PFAM- phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG- neu-NE0060 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) (156 aa)
   
        0.722
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (156 aa)
       
 
  0.710
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (110 aa)
       
 
  0.693
Neut_2433
PFAM- ROK family protein; phosphoglucose isomerase (PGI); KEGG- dra-DR1742 glucose-6-phosphate isomerase; Belongs to the GPI family (768 aa)
         
  0.688
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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