• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
rplT protein (Nitrosomonas eutropha) - STRING interaction network
"rplT" - 50S ribosomal protein L20 in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (119 aa)    
Predicted Functional Partners:
rpmI
PFAM- ribosomal protein L35; KEGG- neu-NE0956 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
 
  0.999
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (129 aa)
 
 
  0.997
rpmA
PFAM- ribosomal protein L27; KEGG- neu-NE1292 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (85 aa)
   
 
  0.997
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
   
 
  0.997
rpsP
PFAM- ribosomal protein S16; KEGG- neu-NE1671 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (85 aa)
   
 
  0.996
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (144 aa)
   
 
  0.995
rplQ
PFAM- ribosomal protein L17; KEGG- neu-NE0427 ribosomal protein L17 (130 aa)
   
 
  0.994
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (208 aa)
   
 
  0.993
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (121 aa)
   
 
  0.993
rpmF
TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- neu-NE1644 probable 50S ribosomal subunit protein L32; Belongs to the bacterial ribosomal protein bL32 family (60 aa)
   
 
  0.993
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (8%) [HD]