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STRINGSTRING
Neut_2403 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2403" - PFAM: OmpA/MotB domain protein in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Experiments
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[Homology]
Score
Neut_2403PFAM- OmpA/MotB domain protein; 17 kDa surface antigen; KEGG- neu-NE1025 bacterial outer membrane protein; Belongs to the ompA family (220 aa)    
Predicted Functional Partners:
Neut_2402
PFAM- peptidase S49; KEGG- neu-NE1024 peptidase family U7 (317 aa)
 
          0.792
Neut_0938
PFAM- WD40 domain protein beta Propeller; KEGG- neu-NE1761 hypothetical protein (346 aa)
 
 
  0.622
Neut_0771
PFAM- peptidase M48, Ste24p; KEGG- neu-NE1475 hypothetical protein (263 aa)
   
        0.615
Neut_2492
TIGRFAM- lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM- protein of unknown function DUF214; KEGG- neu-NE1057 DUF214 (415 aa)
   
 
  0.595
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (206 aa)
   
 
  0.588
Neut_2470
Urea amidolyase related protein; KEGG- neu-NE2420 biotin / lipoyl attachment-carbamoyl-phosphate synthase-DUF183; TIGRFAM- urea amidolyase related protein; PFAM- biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein (1206 aa)
   
   
  0.569
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (92 aa)
   
      0.555
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5’-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (206 aa)
   
 
  0.548
rpmF
TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- neu-NE1644 probable 50S ribosomal subunit protein L32; Belongs to the bacterial ribosomal protein bL32 family (60 aa)
     
      0.533
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (110 aa)
     
      0.523
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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