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STRINGSTRING
Neut_2438 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2438" - PFAM: FlgN family protein in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2438PFAM- FlgN family protein; KEGG- neu-NE2477 putative flagella synthesis protein FlgN (154 aa)    
Predicted Functional Partners:
Neut_2439
PFAM- Anti-sigma-28 factor, FlgM family protein; KEGG- neu-NE2478 negative regulator of flagellin synthesis FlgM (100 aa)
   
   
  0.989
flgK
TIGRFAM- flagellar hook-associated protein FlgK; PFAM- flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG- neu-NE0311 flagella basal body rod protein (467 aa)
   
 
  0.923
Neut_0741
TIGRFAM- flagellar export protein FliJ; PFAM- flagellar FliJ protein; KEGG- neu-NE2087 flagellar FliJ protein (150 aa)
   
   
  0.833
Neut_0334
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly (231 aa)
 
   
  0.826
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3’-5’) cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility (269 aa)
 
        0.811
Neut_0751
KEGG- neu-NE2077 hypothetical protein (341 aa)
   
   
  0.802
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes (236 aa)
   
 
  0.802
Neut_0949
PFAM- flagellar protein FliS; KEGG- neu-NE1596 flagellar protein FliS (156 aa)
   
   
  0.776
Neut_0855
PFAM- Sulfate transporter/antisigma-factor antagonist STAS; KEGG- neu-NE2380 STAS domain (104 aa)
   
          0.755
Neut_1824
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (491 aa)
   
 
  0.740
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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