Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABE74536.1 | ABE74584.1 | Pcryo_0753 | Pcryo_0801 | Conserved hypothetical protein. | 3'-5' exonuclease. | 0.915 |
ABE74536.1 | ABE75450.1 | Pcryo_0753 | Pcryo_1673 | Conserved hypothetical protein. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.763 |
ABE74536.1 | rnr | Pcryo_0753 | Pcryo_2420 | Conserved hypothetical protein. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.449 |
ABE74536.1 | rph | Pcryo_0753 | Pcryo_2154 | Conserved hypothetical protein. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.824 |
ABE74536.1 | rpsD | Pcryo_0753 | Pcryo_0508 | Conserved hypothetical protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
ABE74536.1 | rpsE | Pcryo_0753 | Pcryo_0501 | Conserved hypothetical protein. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.998 |
ABE74536.1 | rpsK | Pcryo_0753 | Pcryo_0507 | Conserved hypothetical protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.998 |
ABE74584.1 | ABE74536.1 | Pcryo_0801 | Pcryo_0753 | 3'-5' exonuclease. | Conserved hypothetical protein. | 0.915 |
ABE74584.1 | ABE75198.1 | Pcryo_0801 | Pcryo_1419 | 3'-5' exonuclease. | ATP-dependent helicase HrpA. | 0.940 |
ABE74584.1 | ABE75450.1 | Pcryo_0801 | Pcryo_1673 | 3'-5' exonuclease. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.947 |
ABE74584.1 | rnr | Pcryo_0801 | Pcryo_2420 | 3'-5' exonuclease. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.975 |
ABE74584.1 | rph | Pcryo_0801 | Pcryo_2154 | 3'-5' exonuclease. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.995 |
ABE74584.1 | rpsD | Pcryo_0801 | Pcryo_0508 | 3'-5' exonuclease. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.937 |
ABE74584.1 | rpsE | Pcryo_0801 | Pcryo_0501 | 3'-5' exonuclease. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.789 |
ABE74584.1 | rpsK | Pcryo_0801 | Pcryo_0507 | 3'-5' exonuclease. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.935 |
ABE75198.1 | ABE74584.1 | Pcryo_1419 | Pcryo_0801 | ATP-dependent helicase HrpA. | 3'-5' exonuclease. | 0.940 |
ABE75198.1 | ABE75450.1 | Pcryo_1419 | Pcryo_1673 | ATP-dependent helicase HrpA. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.946 |
ABE75198.1 | rph | Pcryo_1419 | Pcryo_2154 | ATP-dependent helicase HrpA. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.830 |
ABE75198.1 | rpsD | Pcryo_1419 | Pcryo_0508 | ATP-dependent helicase HrpA. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.939 |
ABE75198.1 | rpsE | Pcryo_1419 | Pcryo_0501 | ATP-dependent helicase HrpA. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.880 |
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