STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0254KEGG: dde:Dde_0735 hypothetical protein. (374 aa)    
Predicted Functional Partners:
Sfum_1765
PFAM: polysaccharide deacetylase; KEGG: dps:DP1752 hypothetical protein.
     0.897
Sfum_3907
PFAM: glycosyl transferase, group 1; KEGG: dps:DP0620 similar to glycosyl transferase.
 
     0.797
Sfum_3906
PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_1681 PE-PGRS family protein.
 
     0.794
Sfum_0251
PFAM: protein of unknown function DUF214; KEGG: dps:DP1755 hypothetical protein.
 
    0.786
Sfum_3250
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0722 ATPase.
 
     0.783
Sfum_4031
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0722 ATPase.
 
     0.783
Sfum_2261
PFAM: glycosyl transferase, group 1; KEGG: sil:SPO1536 glycosyltransferase, group 1.
 
     0.756
Sfum_1627
PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP1765 hypothetical protein.
 
     0.749
Sfum_4030
PFAM: cyclic nucleotide-binding; KEGG: dde:Dde_0723 cyclic nucleotide-binding domain (cNMP-BD) protein.
 
   
 0.716
Sfum_0253
PFAM: protein of unknown function DUF214; KEGG: dps:DP1753 hypothetical protein.
 
    0.584
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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