STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0271Sulphate transporter; PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sat:SYN_03745 hypothetical membrane protein. (396 aa)    
Predicted Functional Partners:
Sfum_0445
PFAM: Cytochrome b/b6, N-terminal domain; KEGG: ade:Adeh_2404 cytochrome b/b6-like.
    
 
 0.847
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.844
Sfum_0090
KEGG: dvu:DVU3144 cytochrome c family protein.
    
 
 0.835
Sfum_0208
KEGG: mta:Moth_0986 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.680
Sfum_1936
KEGG: mta:Moth_0986 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.680
Sfum_0275
KEGG: sat:SYN_00840 hypothetical cytosolic protein.
 
     0.636
Sfum_1848
PFAM: Ankyrin; KEGG: syd:Syncc9605_0824 ankyrin.
   
 
 0.635
Sfum_0277
PFAM: aspartate/glutamate/uridylate kinase; KEGG: swo:Swol_2454 uridylate kinase.
 
     0.634
Sfum_1537
KEGG: eba:ebA2790 hypothetical protein.
    
 
 0.632
Sfum_3384
PFAM: Ankyrin; KEGG: mma:MM0045 hypothetical protein.
    
 
 0.632
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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