STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0655KEGG: dde:Dde_0322 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Sfum_0654
PFAM: response regulator receiver; KEGG: dde:Dde_0328 response regulator receiver domain protein (CheY-like).
 
   
 0.855
Sfum_0631
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dvu:DVU3216 sensor histidine kinase.
 
     0.737
Sfum_0649
Phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: dvu:DVU3214 phosphoenolpyruvate synthase-related protein.
 
    0.708
Sfum_0645
KEGG: dvu:DVU0133 hypothetical protein.
 
     0.690
Sfum_0653
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: dde:Dde_3641 sulfate permease.
 
     0.676
Sfum_0644
PFAM: protein of unknown function DUF81; KEGG: dvu:DVU0132 hypothetical protein.
 
     0.642
Sfum_2870
PFAM: UspA domain protein; KEGG: dvu:DVU0742 hypothetical protein.
  
   
 0.634
Sfum_0642
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dvu:DVU0109 sensor histidine kinase.
 
     0.629
Sfum_0040
KEGG: dps:DP0127 hypothetical protein.
  
     0.624
Sfum_0630
Phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: dvu:DVU0152 phosphoenolpyruvate synthase-related protein.
  
    0.616
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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