node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
nusA | rbfA | Sfum_1227 | Sfum_1230 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.595 |
nusA | rimP | Sfum_1227 | Sfum_1226 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.972 |
nusA | rpsB | Sfum_1227 | Sfum_1778 | NusA antitermination factor; Participates in both transcription termination and antitermination. | PFAM: ribosomal protein S2; KEGG: gsu:GSU1921 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.990 |
nusA | rpsC | Sfum_1227 | Sfum_1561 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.986 |
nusA | rpsF | Sfum_1227 | Sfum_3188 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.965 |
nusA | rpsG | Sfum_1227 | Sfum_1552 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.990 |
nusA | rpsJ | Sfum_1227 | Sfum_1554 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.988 |
nusA | rpsL | Sfum_1227 | Sfum_1551 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.986 |
nusA | rpsM | Sfum_1227 | Sfum_1579 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.964 |
nusA | rpsZ | Sfum_1227 | Sfum_1568 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.972 |
rbfA | nusA | Sfum_1230 | Sfum_1227 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.595 |
rbfA | rimP | Sfum_1230 | Sfum_1226 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.904 |
rbfA | rpsB | Sfum_1230 | Sfum_1778 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | PFAM: ribosomal protein S2; KEGG: gsu:GSU1921 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.900 |
rbfA | rpsC | Sfum_1230 | Sfum_1561 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.893 |
rbfA | rpsF | Sfum_1230 | Sfum_3188 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.903 |
rbfA | rpsG | Sfum_1230 | Sfum_1552 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.905 |
rbfA | rpsJ | Sfum_1230 | Sfum_1554 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.866 |
rbfA | rpsL | Sfum_1230 | Sfum_1551 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.889 |
rbfA | rpsM | Sfum_1230 | Sfum_1579 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.878 |
rbfA | rpsZ | Sfum_1230 | Sfum_1568 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.841 |