STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2438TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: ade:Adeh_1757 aspartate ammonia-lyase. (466 aa)    
Predicted Functional Partners:
Sfum_4095
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gme:Gmet_2911 fumarate reductase/succinate dehydrogenase flavoprotein-like.
 
 
 0.923
Sfum_0605
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
 0.913
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pca:Pcar_2418 argininosuccinate lyase.
     
0.910
Sfum_0660
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: gme:Gmet_1943 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
0.908
Sfum_1171
Aminotransferase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: pca:Pcar_1888 aspartate aminotransferase.
    
 0.908
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.908
Sfum_1665
PFAM: aminotransferase, class I and II; KEGG: gsu:GSU1242 aspartate aminotransferase.
    
 0.908
Sfum_1842
PFAM: fumarate lyase; KEGG: pca:Pcar_1630 aspartate ammonia-lyase, putative.
  
  
 
0.906
Sfum_0965
PFAM: asparagine synthase; KEGG: dar:Daro_2408 asparagine synthase, glutamine-hydrolyzing.
     
 0.905
Sfum_0589
PFAM: fumarate lyase; KEGG: rfr:Rfer_3846 fumarate lyase.
  
  
 
0.903
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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