STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2547PFAM: protein of unknown function DUF255; KEGG: chy:CHY_1723 hypothetical protein. (684 aa)    
Predicted Functional Partners:
Sfum_1526
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: ftl:FTL_1074 GDSL-like lipase/acylhydrolase family protein.
   
 
 0.598
Sfum_0178
Cellulose-binding; KEGG: mmp:MMP0898 cellulose-binding, bacterial type.
    
 
 0.543
Sfum_0220
Hypothetical protein; KEGG: gvi:gll0640 similar to glucosamine-6-sulfatase.
    
 
 0.543
Sfum_0221
Hypothetical protein; KEGG: gvi:gll0640 similar to glucosamine-6-sulfatase.
    
 
 0.543
Sfum_0329
KEGG: gme:Gmet_2469 fibronectin, type III.
    
 
 0.543
Sfum_0408
Hypothetical protein; KEGG: mmp:MMP0898 cellulose-binding, bacterial type.
    
 
 0.543
Sfum_0949
PFAM: Fibronectin, type III domain protein; peptidase domain protein; KEGG: tcx:Tcr_0105 VCBS.
    
 
 0.543
Sfum_0952
PFAM: Fibronectin, type III domain protein; KEGG: sat:SYN_01547 fibronectin type III domain protein.
    
 
 0.543
Sfum_1023
PFAM: LCCL domain protein; KEGG: jan:Jann_2668 LCCL.
    
 
 0.543
Sfum_1078
KEGG: mxa:MXAN_2793 putative lipoprotein.
    
 
 0.543
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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