STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_2993KEGG: dde:Dde_3065 membrane-bound lytic murein transglycosylase B-like. (336 aa)    
Predicted Functional Partners:
Sfum_2589
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sat:SYN_00551 cell elongation specific D,D-transpeptidase.
   
 
 0.555
Sfum_3465
PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: gme:Gmet_0406 penicillin-binding protein, transpeptidase.
   
 
 0.494
Sfum_2994
PFAM: Dynamin family protein; KEGG: mca:MCA1193 hypothetical protein.
       0.492
rlmE
Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
 
     0.456
Sfum_0486
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: bth:BT4487 putative membrane-bound lytic murein transglycosylase.
  
   
 0.442
bamD
Lipoprotein, ComL family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.434
Sfum_1763
KEGG: dde:Dde_1143 hypothetical protein.
  
     0.422
Sfum_3203
Hypothetical protein.
 
     0.415
Sfum_1925
Hypothetical protein; KEGG: bld:BLi02343 YpbR.
  
     0.408
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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