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rimM1 protein (Syntrophobacter fumaroxidans) - STRING interaction network
"rimM1" - Ribosome maturation factor RimM in Syntrophobacter fumaroxidans
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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rimM1Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family (176 aa)    
Predicted Functional Partners:
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (252 aa)
 
   
  0.970
rpsP
PFAM- ribosomal protein S16; KEGG- bld-BLi01819 ribosomal protein S16 (BS17); RBL04771; Belongs to the bacterial ribosomal protein bS16 family (86 aa)
   
   
  0.932
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (95 aa)
     
      0.863
Sfum_2998
UPF0109 protein Sfum_2998; KEGG- dvu-DVU0838 hypothetical protein; Belongs to the UPF0109 family (77 aa)
   
        0.859
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (115 aa)
   
   
  0.853
Sfum_3001
Uncharacterized protein; KEGG- tma-TM1570 conserved hypothetical protein (189 aa)
              0.847
Sfum_3000
KEGG- gsu-GSU0646 tRNA (guanine-N1)-methyltransferase; TIGRFAM- tRNA (guanine-N1)-methyltransferase; PFAM- tRNA (guanine-N1-)-methyltransferase (252 aa)
 
   
  0.817
Sfum_2997
PFAM- ribosomal protein S16; KEGG- bld-BLi01819 ribosomal protein S16 (BS17); RBL04771 (86 aa)
   
   
  0.779
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA (147 aa)
   
   
  0.776
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy (123 aa)
   
   
  0.760
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB
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