STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3411PFAM: nitrogen-fixing NifU domain protein; KEGG: dps:DP0957 similar to nitrogen fixation protein (NifU). (154 aa)    
Predicted Functional Partners:
Sfum_2683
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.986
Sfum_2808
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: bma:BMAA0379 cysteine desulfurase.
 
 0.982
Sfum_2684
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 
 0.908
Sfum_0911
PFAM: aminotransferase, class V; KEGG: mxa:MXAN_1570 aminotransferase, class V.
  
 
 0.902
Sfum_1204
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: gme:Gmet_1300 cysteine desulphurase related, unknown function.
  
 
 0.902
Sfum_0164
PFAM: ABC transporter related; KEGG: dde:Dde_1445 ATPase.
  
  
 0.777
Sfum_0163
PFAM: SufBD protein; KEGG: deh:cbdb_A794 iron-regulated ABC transporter, subunit SufB-related.
  
  
 0.772
Sfum_4034
KEGG: sat:SYN_03823 hypothetical cytosolic protein.
  
  
 0.748
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.699
Sfum_0343
KEGG: mca:MCA1306 DnaK-related protein.
  
 
 0.699
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.