STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_3768Iron (metal) dependent repressor, DtxR family; PFAM: regulatory protein, MarR; iron dependent repressor; KEGG: dps:DP2966 iron-dependent repressor. (177 aa)    
Predicted Functional Partners:
Sfum_0536
Signal peptidase I. Serine peptidase. MEROPS family S26A; KEGG: sat:SYN_01527 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family.
   
    0.809
tpx
Thiol peroxidase (atypical 2-Cys peroxiredoxin); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.479
Sfum_3215
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; domain of unknown function DUF1731.
   
    0.459
Sfum_2493
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
  
 0.442
Sfum_2735
PFAM: ABC-3 protein; KEGG: dps:DP3062 probable Mn/Zn ABC transporter, permease.
  
  
 0.431
Sfum_0024
PFAM: periplasmic solute binding protein; KEGG: dvu:DVU1343 cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.426
Sfum_2734
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: syn:slr2044 ABC-type zinc transport system ATP-binding protein.
  
  
 0.421
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.420
Sfum_0025
Putative ferric uptake regulator, Fur family; KEGG: reu:Reut_A0164 putative transcription regulator protein; Belongs to the Fur family.
  
  
 0.413
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
  
 0.413
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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