UREG_01391 protein (Uncinocarpus reesii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UREG_01391

VWFA domain-containing protein. (288 aa)

Predicted Functional Partners:

UREG_00508

0.999

UREG_01198

0.999

UREG_02593

0.999

UREG_01263

0.999

UREG_01412

0.999

UREG_04289

0.999

UREG_03050

0.999

UREG_03200

0.999

UREG_05224

0.999

UREG_05426

0.999

Your Current Organism:

Uncinocarpus reesii

NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UREG_00508	UREG_01198	C4JE84	C4JGK7	PCI domain-containing protein.	26S proteasome regulatory subunit RPN7.	0.999
UREG_00508	UREG_01263	C4JE84	C4JH12	PCI domain-containing protein.	Proteasome subunit alpha type.	0.998
UREG_00508	UREG_01391	C4JE84	C4JHW6	PCI domain-containing protein.	VWFA domain-containing protein.	0.999
UREG_00508	UREG_01412	C4JE84	C4JHY7	PCI domain-containing protein.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
UREG_00508	UREG_02593	C4JE84	C4JGT1	PCI domain-containing protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
UREG_00508	UREG_03050	C4JE84	C4JNZ1	PCI domain-containing protein.	Proteasome subunit alpha type.	0.998
UREG_00508	UREG_03200	C4JE84	C4JPM8	PCI domain-containing protein.	26S proteasome regulatory subunit rpn-8.	0.999
UREG_00508	UREG_04289	C4JE84	C4JN83	PCI domain-containing protein.	26S protease regulatory subunit 4.	0.999
UREG_00508	UREG_05224	C4JE84	C4JRY5	PCI domain-containing protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
UREG_00508	UREG_05426	C4JE84	C4JSI7	PCI domain-containing protein.	Uncharacterized protein.	0.999
UREG_01198	UREG_00508	C4JGK7	C4JE84	26S proteasome regulatory subunit RPN7.	PCI domain-containing protein.	0.999
UREG_01198	UREG_01263	C4JGK7	C4JH12	26S proteasome regulatory subunit RPN7.	Proteasome subunit alpha type.	0.996
UREG_01198	UREG_01391	C4JGK7	C4JHW6	26S proteasome regulatory subunit RPN7.	VWFA domain-containing protein.	0.999
UREG_01198	UREG_01412	C4JGK7	C4JHY7	26S proteasome regulatory subunit RPN7.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
UREG_01198	UREG_02593	C4JGK7	C4JGT1	26S proteasome regulatory subunit RPN7.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
UREG_01198	UREG_03050	C4JGK7	C4JNZ1	26S proteasome regulatory subunit RPN7.	Proteasome subunit alpha type.	0.997
UREG_01198	UREG_03200	C4JGK7	C4JPM8	26S proteasome regulatory subunit RPN7.	26S proteasome regulatory subunit rpn-8.	0.999
UREG_01198	UREG_04289	C4JGK7	C4JN83	26S proteasome regulatory subunit RPN7.	26S protease regulatory subunit 4.	0.999
UREG_01198	UREG_05224	C4JGK7	C4JRY5	26S proteasome regulatory subunit RPN7.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
UREG_01198	UREG_05426	C4JGK7	C4JSI7	26S proteasome regulatory subunit RPN7.	Uncharacterized protein.	0.999