STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00711700Transcription initiation factor TFIID subunit 15. (409 aa)    
Predicted Functional Partners:
CKAN_02120600
Transcription initiation factor TFIID subunit 12b-like protein isoform X2.
   
  0.776
CKAN_00384700
Transcription initiation factor TFIID subunit 5.
    
  0.776
CKAN_02438600
Transcription initiation factor TFIID subunit 4b isoform X2.
   
  0.770
CKAN_02453500
Transcription initiation factor TFIID subunit 13-like protein.
   
 0.730
CKAN_00868800
Transportin-1 isoform X1.
    
 
 0.724
CKAN_00432600
Ubiquitin domain-containing protein.
     
 0.717
CKAN_01967600
Heterogeneous nuclear ribonucleoprotein H3 isoform X1.
   
 0.715
CKAN_02601000
Transcription initiation factor TFIID subunit 7.
    
  0.705
CKAN_02656500
Transcription initiation factor TFIID subunit 12 isoform X1.
   
  0.700
CKAN_00695500
/SPRY domain-containing protein.
   
 0.686
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.