STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00563300Putative serine/threonine protein kinase IREH1 isoform X1. (1288 aa)    
Predicted Functional Partners:
CKAN_00680500
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
  
  
  0.582
CKAN_00307700
Nuclear pore protein.
   
 
  0.533
CKAN_00043600
LisH domain-containing protein.
     
 0.454
CKAN_00043200
LisH domain-containing protein.
     
 0.454
CKAN_01133900
Serine/threonine-protein phosphatase 2A regulatory subunit A beta isoform-like protein.
     
 0.454
CKAN_00043000
LisH domain-containing protein.
     
 0.454
CKAN_02434500
Formin-binding protein 4-like protein isoform X1.
     
 0.454
CKAN_00371000
Serine/threonine-protein phosphatase 2A regulatory subunit A beta isoform isoform X2.
     
 0.454
CKAN_02053400
Serine/threonine-protein phosphatase 2A regulatory subunit A beta isoform isoform X2.
     
 0.454
CKAN_00780500
Zinc finger protein.
   
    0.404
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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