STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01535500NLI interacting factor. (194 aa)    
Predicted Functional Partners:
CKAN_00002200
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.910
CKAN_01072300
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.910
CKAN_01914400
Phosphatidate phosphatase PAH2-like protein.
    
 0.877
CKAN_02175900
Phosphatidate phosphatase PAH2-like protein.
    
 0.877
CKAN_00532000
Phosphatidate phosphatase PAH1-like protein isoform X1.
    
 0.877
CKAN_00298000
Putative mitochondrial import inner membrane translocase subunit TIM21.
    
 0.849
CKAN_00770600
General transcription factor IIF subunit 2.
   
 0.837
CKAN_00205900
DNA-directed RNA polymerases II, IV and V subunit 11.
    
 0.807
CKAN_01979800
Mitochondrial import inner membrane translocase subunit TIM23-2-like protein.
    
 0.798
CKAN_01332400
Mitochondrial import inner membrane translocase subunit TIM23-2-like protein.
    
 0.798
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.