STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00364300Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (783 aa)    
Predicted Functional Partners:
CKAN_00774500
Ribosomal protein L2.
    
 
 0.865
CKAN_01320300
Ribosomal protein L2.
    
 
 0.865
CKAN_01320400
60S ribosomal protein L8-like protein.
    
 
 0.865
CKAN_01249400
Ribosomal protein L2 mitochondrion.
    
 
 0.732
CKAN_02773800
Ribosomal protein L2 mitochondrion.
    
 
 0.732
CKAN_02752300
Ribosomal protein L2 mitochondrion.
    
 
 0.732
CKAN_01249600
Ribosomal protein L2 mitochondrion.
    
 
 0.732
CKAN_02787400
Ribosomal protein L2 mitochondrion.
    
 
 0.732
CKAN_02524900
60S ribosomal protein L27a-2; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.577
CKAN_02333700
JmjC domain-containing protein.
      
 0.509
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.