STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02781300E3 ubiquitin-protein ligase SINAT2-like protein. (206 aa)    
Predicted Functional Partners:
CKAN_02556800
Calcyclin-binding-like protein.
    
 0.856
CKAN_02683600
Calcyclin-binding protein.
    
 0.856
CKAN_02684000
Calcyclin-binding protein.
    
 0.856
CKAN_00654500
F-box-like/WD repeat-containing protein TBL1XR1.
    
 0.757
CKAN_01322400
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.671
CKAN_01538400
Ubiquitin-conjugating enzyme E2 36-like protein isoform X1.
    
 0.502
CKAN_01735100
Ubiquitin-conjugating enzyme, E2.
    
 0.502
CKAN_00583600
Protein PEROXIN-4 isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.502
CKAN_00916600
Ubiquitin-conjugating enzyme E2 28; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.502
CKAN_02245100
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.502
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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