STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00570400UDP-glucose 6-dehydrogenase. (480 aa)    
Predicted Functional Partners:
CKAN_00524800
UDP-glucuronic acid decarboxylase 6.
 
 0.978
CKAN_02461500
dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase.
 
 0.950
CKAN_00495000
dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase.
 
 0.949
CKAN_01110800
NAD-dependent epimerase/dehydratase.
  
 0.939
CKAN_00883700
GDP-mannose 4,6 dehydratase.
  
 
 0.937
CKAN_02416900
Formyl transferase.
  
 
 0.937
CKAN_01467800
NAD-dependent epimerase/dehydratase.
  
 
 0.935
CKAN_02048200
NAD-dependent epimerase/dehydratase.
  
 
 0.935
CKAN_02561600
annotation not available
  
 
 0.935
CKAN_01746900
annotation not available
  
 
 0.935
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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