STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00647100Protein SHORT-ROOT-like protein; Belongs to the GRAS family. (495 aa)    
Predicted Functional Partners:
CKAN_00767800
Protein SCARECROW; Belongs to the GRAS family.
    
 
0.957
CKAN_01389700
Zinc finger protein NUTCRACKER-like protein.
    
 
 0.668
CKAN_01960200
Protein indeterminate-domain-containing protein.
    
 
 0.668
CKAN_00082000
Protein indeterminate-domain-containing protein.
    
 
 0.668
CKAN_01343100
Protein indeterminate-domain-containing protein.
    
 
 0.668
CKAN_02212600
Protein indeterminate-domain-containing protein.
    
 
 0.668
CKAN_00194500
Protein indeterminate-domain-containing protein.
    
 
 0.668
CKAN_00660000
Protein indeterminate-domain-containing protein.
    
 
 0.668
CKAN_01867700
Zinc finger protein MAGPIE.
    
 
 0.668
CKAN_00104500
Putative prolyl 4-hydroxylase 9 isoform X2.
      
 0.443
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.