STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01091900Protein NETWORKED 1D. (267 aa)    
Predicted Functional Partners:
CKAN_01213300
NAD-dependent protein deacetylase SRT1.
    
  0.579
CKAN_01649800
Enolase.
    
 0.557
CKAN_00934400
Enolase.
    
 0.557
CKAN_01387600
Enolase 1, chloroplastic.
    
 0.557
CKAN_01506900
Cytosolic enolase 3 isoform X1.
    
 0.557
CKAN_00713700
Peptidase C50.
   
 0.554
CKAN_00394000
Protein MEMO1.
   
  0.541
CKAN_00789100
Malate dehydrogenase 1, mitochondrial.
   
 0.499
CKAN_01163600
Malate dehydrogenase, glyoxysomal isoform X1.
   
 0.499
CKAN_00637600
Malate dehydrogenase, mitochondrial.
   
 0.499
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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