STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01317200Photosystem II PsbQ. (218 aa)    
Predicted Functional Partners:
CKAN_00687600
Photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like protein.
   
0.972
CKAN_00805200
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 0.971
CKAN_02481800
Photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1.
   
 0.965
CKAN_01789800
Photosynthetic NDH subunit of subcomplex B 5, chloroplastic.
   
 
 0.960
CKAN_02031200
Photosynthetic NDH subunit of subcomplex B 1, chloroplastic.
   
 
 0.959
CKAN_00901800
Photosynthetic NDH subunit of subcomplex B 2, chloroplastic.
   
 
 0.958
CKAN_00765600
NADPH-quinone oxidoreductase subunit N, chloroplastic.
   
 
 0.956
CKAN_01604200
Photosystem I reaction center subunit XI, chloroplastic-like protein.
    
 0.948
CKAN_02722700
NADH-plastoquinone oxidoreductase subunit 4 chloroplast.
    
  0.947
CKAN_01062100
Photosystem I reaction center subunit III, chloroplastic.
    
 0.946
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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