STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (131 aa)    
Predicted Functional Partners:
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 0.999
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.982
Ppro_0566
Acetylornithine aminotransferase apoenzyme; PFAM: aminotransferase class-III; KEGG: sat:SYN_01215 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.916
Ppro_0931
PFAM: Pyridoxal-dependent decarboxylase; KEGG: gme:Gmet_1644 pyridoxal-dependent decarboxylase.
     
 0.910
Ppro_2352
PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_1577 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.908
Ppro_1736
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.847
Ppro_1046
PFAM: aminotransferase, class I and II; KEGG: gsu:GSU1061 aspartate aminotransferase.
    
 0.821
Ppro_1493
PFAM: fumarate lyase; KEGG: pca:Pcar_1630 aspartate ammonia-lyase, putative.
     
 0.821
Ppro_2189
L-aspartate aminotransferase apoenzyme; PFAM: aminotransferase, class I and II; KEGG: gsu:GSU1242 aspartate aminotransferase.
    
 0.821
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.815
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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