STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_3582PFAM: DNA repair protein RadC; KEGG: gsu:GSU0386 DNA repair protein RadC; Belongs to the UPF0758 family. (229 aa)    
Predicted Functional Partners:
Ppro_3255
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.765
Ppro_2731
KEGG: gsu:GSU0124 competence protein F, putative.
 
    0.738
Ppro_3581
PFAM: methyladenine glycosylase; KEGG: mca:MCA0358 DNA-3-methyladenine glycosylase I.
       0.719
Ppro_2547
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.690
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.665
Ppro_0627
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: gsu:GSU0143 competence/damage-inducible protein CinA; Belongs to the CinA family.
     
 0.487
Ppro_1379
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: gsu:GSU1657 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.474
Ppro_2675
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: gsu:GSU0946 sensory box/GGDEF family protein.
  
    0.417
Ppro_0529
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gsu:GSU2550 DNA processing protein DprA.
   
  
 0.409
Ppro_3584
PFAM: protein of unknown function DUF47; KEGG: gme:Gmet_3132 protein of unknown function DUF47.
       0.405
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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