Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_0037 | Rfer_0038 | Rfer_0037 | Rfer_0038 | Tetratricopeptide TPR_2. | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | 0.981 |
Rfer_0037 | Rfer_0039 | Rfer_0037 | Rfer_0039 | Tetratricopeptide TPR_2. | Periplasmic protein thiol. | 0.985 |
Rfer_0037 | Rfer_0040 | Rfer_0037 | Rfer_0040 | Tetratricopeptide TPR_2. | Cytochrome c-type biogenesis protein CcmF. | 0.991 |
Rfer_0037 | Rfer_0042 | Rfer_0037 | Rfer_0042 | Tetratricopeptide TPR_2. | Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.929 |
Rfer_0037 | Rfer_0044 | Rfer_0037 | Rfer_0044 | Tetratricopeptide TPR_2. | Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.961 |
Rfer_0037 | ccmA | Rfer_0037 | Rfer_0045 | Tetratricopeptide TPR_2. | Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.959 |
Rfer_0037 | ccmC | Rfer_0037 | Rfer_0043 | Tetratricopeptide TPR_2. | Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.966 |
Rfer_0037 | ccmE | Rfer_0037 | Rfer_0041 | Tetratricopeptide TPR_2. | CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.967 |
Rfer_0038 | Rfer_0037 | Rfer_0038 | Rfer_0037 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Tetratricopeptide TPR_2. | 0.981 |
Rfer_0038 | Rfer_0039 | Rfer_0038 | Rfer_0039 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Periplasmic protein thiol. | 0.980 |
Rfer_0038 | Rfer_0040 | Rfer_0038 | Rfer_0040 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Cytochrome c-type biogenesis protein CcmF. | 0.987 |
Rfer_0038 | Rfer_0042 | Rfer_0038 | Rfer_0042 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.912 |
Rfer_0038 | Rfer_0044 | Rfer_0038 | Rfer_0044 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.966 |
Rfer_0038 | Rfer_2964 | Rfer_0038 | Rfer_2964 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.419 |
Rfer_0038 | ccmA | Rfer_0038 | Rfer_0045 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.967 |
Rfer_0038 | ccmC | Rfer_0038 | Rfer_0043 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.972 |
Rfer_0038 | ccmE | Rfer_0038 | Rfer_0041 | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.975 |
Rfer_0039 | Rfer_0037 | Rfer_0039 | Rfer_0037 | Periplasmic protein thiol. | Tetratricopeptide TPR_2. | 0.985 |
Rfer_0039 | Rfer_0038 | Rfer_0039 | Rfer_0038 | Periplasmic protein thiol. | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | 0.980 |
Rfer_0039 | Rfer_0040 | Rfer_0039 | Rfer_0040 | Periplasmic protein thiol. | Cytochrome c-type biogenesis protein CcmF. | 0.994 |
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