Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rfer_0277 | Rfer_0304 | NmrA-like. | Alcohol dehydrogenase, zinc-binding. | 0.459 |
Rfer_0303 | Rfer_0304 | Transcriptional regulator, TetR family. | Alcohol dehydrogenase, zinc-binding. | 0.608 |
Rfer_0303 | Rfer_0305 | Transcriptional regulator, TetR family. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.612 |
Rfer_0303 | Rfer_0306 | Transcriptional regulator, TetR family. | NADH:flavin oxidoreductase/NADH oxidase. | 0.443 |
Rfer_0303 | Rfer_0307 | Transcriptional regulator, TetR family. | Alpha/beta hydrolase. | 0.467 |
Rfer_0304 | Rfer_0277 | Alcohol dehydrogenase, zinc-binding. | NmrA-like. | 0.459 |
Rfer_0304 | Rfer_0303 | Alcohol dehydrogenase, zinc-binding. | Transcriptional regulator, TetR family. | 0.608 |
Rfer_0304 | Rfer_0305 | Alcohol dehydrogenase, zinc-binding. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.679 |
Rfer_0304 | Rfer_0306 | Alcohol dehydrogenase, zinc-binding. | NADH:flavin oxidoreductase/NADH oxidase. | 0.650 |
Rfer_0304 | Rfer_0307 | Alcohol dehydrogenase, zinc-binding. | Alpha/beta hydrolase. | 0.731 |
Rfer_0304 | Rfer_0308 | Alcohol dehydrogenase, zinc-binding. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.452 |
Rfer_0304 | Rfer_0309 | Alcohol dehydrogenase, zinc-binding. | Alcohol dehydrogenase, zinc-binding. | 0.470 |
Rfer_0304 | Rfer_0311 | Alcohol dehydrogenase, zinc-binding. | Alpha/beta hydrolase. | 0.621 |
Rfer_0304 | Rfer_2440 | Alcohol dehydrogenase, zinc-binding. | NAD-dependent epimerase/dehydratase. | 0.429 |
Rfer_0304 | Rfer_4001 | Alcohol dehydrogenase, zinc-binding. | Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.519 |
Rfer_0305 | Rfer_0303 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Transcriptional regulator, TetR family. | 0.612 |
Rfer_0305 | Rfer_0304 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Alcohol dehydrogenase, zinc-binding. | 0.679 |
Rfer_0305 | Rfer_0306 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | NADH:flavin oxidoreductase/NADH oxidase. | 0.670 |
Rfer_0305 | Rfer_0307 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Alpha/beta hydrolase. | 0.719 |
Rfer_0305 | Rfer_0308 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.729 |
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