STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0413Outer membrane efflux protein. (423 aa)    
Predicted Functional Partners:
Rfer_0412
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.983
Rfer_0411
Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.957
Rfer_0416
Conserved hypothetical protein.
 
 
 0.844
Rfer_0414
DSBA oxidoreductase.
 
   
 0.808
Rfer_0415
Disulphide bond formation protein DsbB; Belongs to the DsbB family.
  
    0.777
Rfer_1515
Secretion protein HlyD.
  
 
 0.688
Rfer_0705
Tetratricopeptide TPR_2.
 
  
 0.588
Rfer_2714
Type I secretion membrane fusion protein, HlyD.
  
 
 0.561
Rfer_3769
Type I secretion membrane fusion protein, HlyD.
  
 
 0.561
Rfer_0169
Secretion protein HlyD.
  
 
 0.558
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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