Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rfer_0169 | Rfer_0413 | Secretion protein HlyD. | Outer membrane efflux protein. | 0.558 |
Rfer_0411 | Rfer_0412 | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.995 |
Rfer_0411 | Rfer_0413 | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Outer membrane efflux protein. | 0.957 |
Rfer_0411 | Rfer_0414 | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | DSBA oxidoreductase. | 0.793 |
Rfer_0411 | Rfer_0415 | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Disulphide bond formation protein DsbB; Belongs to the DsbB family. | 0.763 |
Rfer_0411 | Rfer_0416 | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Conserved hypothetical protein. | 0.878 |
Rfer_0412 | Rfer_0411 | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.995 |
Rfer_0412 | Rfer_0413 | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | Outer membrane efflux protein. | 0.983 |
Rfer_0412 | Rfer_0414 | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | DSBA oxidoreductase. | 0.808 |
Rfer_0412 | Rfer_0415 | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | Disulphide bond formation protein DsbB; Belongs to the DsbB family. | 0.785 |
Rfer_0412 | Rfer_0416 | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | Conserved hypothetical protein. | 0.813 |
Rfer_0413 | Rfer_0169 | Outer membrane efflux protein. | Secretion protein HlyD. | 0.558 |
Rfer_0413 | Rfer_0411 | Outer membrane efflux protein. | Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.957 |
Rfer_0413 | Rfer_0412 | Outer membrane efflux protein. | Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.983 |
Rfer_0413 | Rfer_0414 | Outer membrane efflux protein. | DSBA oxidoreductase. | 0.808 |
Rfer_0413 | Rfer_0415 | Outer membrane efflux protein. | Disulphide bond formation protein DsbB; Belongs to the DsbB family. | 0.777 |
Rfer_0413 | Rfer_0416 | Outer membrane efflux protein. | Conserved hypothetical protein. | 0.844 |
Rfer_0413 | Rfer_0705 | Outer membrane efflux protein. | Tetratricopeptide TPR_2. | 0.588 |
Rfer_0413 | Rfer_1515 | Outer membrane efflux protein. | Secretion protein HlyD. | 0.688 |
Rfer_0413 | Rfer_2714 | Outer membrane efflux protein. | Type I secretion membrane fusion protein, HlyD. | 0.561 |
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