Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_0461 | Rfer_1911 | Rfer_0461 | Rfer_1911 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | Aminotransferase. | 0.909 |
Rfer_0461 | ilvD | Rfer_0461 | Rfer_1921 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.955 |
Rfer_0461 | ilvE | Rfer_0461 | Rfer_0506 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.924 |
Rfer_0461 | leuA | Rfer_0461 | Rfer_2345 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.951 |
Rfer_0881 | Rfer_1509 | Rfer_0881 | Rfer_1509 | Aminotransferase. | Glutamate dehydrogenase (NAD). | 0.902 |
Rfer_0881 | Rfer_1911 | Rfer_0881 | Rfer_1911 | Aminotransferase. | Aminotransferase. | 0.900 |
Rfer_0881 | argA | Rfer_0881 | Rfer_2105 | Aminotransferase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.915 |
Rfer_0881 | argJ | Rfer_0881 | Rfer_2910 | Aminotransferase. | Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.912 |
Rfer_0976 | Rfer_1911 | Rfer_0976 | Rfer_1911 | Ornithine cyclodeaminase. | Aminotransferase. | 0.908 |
Rfer_0976 | Rfer_4054 | Rfer_0976 | Rfer_4054 | Ornithine cyclodeaminase. | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.903 |
Rfer_1509 | Rfer_0881 | Rfer_1509 | Rfer_0881 | Glutamate dehydrogenase (NAD). | Aminotransferase. | 0.902 |
Rfer_1509 | Rfer_1911 | Rfer_1509 | Rfer_1911 | Glutamate dehydrogenase (NAD). | Aminotransferase. | 0.914 |
Rfer_1509 | argA | Rfer_1509 | Rfer_2105 | Glutamate dehydrogenase (NAD). | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.900 |
Rfer_1509 | argJ | Rfer_1509 | Rfer_2910 | Glutamate dehydrogenase (NAD). | Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.900 |
Rfer_1911 | Rfer_0461 | Rfer_1911 | Rfer_0461 | Aminotransferase. | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | 0.909 |
Rfer_1911 | Rfer_0881 | Rfer_1911 | Rfer_0881 | Aminotransferase. | Aminotransferase. | 0.900 |
Rfer_1911 | Rfer_0976 | Rfer_1911 | Rfer_0976 | Aminotransferase. | Ornithine cyclodeaminase. | 0.908 |
Rfer_1911 | Rfer_1509 | Rfer_1911 | Rfer_1509 | Aminotransferase. | Glutamate dehydrogenase (NAD). | 0.914 |
Rfer_1911 | Rfer_4054 | Rfer_1911 | Rfer_4054 | Aminotransferase. | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.909 |
Rfer_1911 | argA | Rfer_1911 | Rfer_2105 | Aminotransferase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.915 |
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