Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_0734 | Rfer_1379 | Rfer_0734 | Rfer_1379 | 5-nucleotidase. | Phosphoribosyltransferase. | 0.900 |
Rfer_0734 | Rfer_2241 | Rfer_0734 | Rfer_2241 | 5-nucleotidase. | Pyrimidine nucleoside phosphorylase-like. | 0.900 |
Rfer_0734 | ppnP | Rfer_0734 | Rfer_2688 | 5-nucleotidase. | Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.900 |
Rfer_0734 | surE | Rfer_0734 | Rfer_2782 | 5-nucleotidase. | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
Rfer_0734 | upp | Rfer_0734 | Rfer_2073 | 5-nucleotidase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.900 |
Rfer_1379 | Rfer_0734 | Rfer_1379 | Rfer_0734 | Phosphoribosyltransferase. | 5-nucleotidase. | 0.900 |
Rfer_1379 | Rfer_2241 | Rfer_1379 | Rfer_2241 | Phosphoribosyltransferase. | Pyrimidine nucleoside phosphorylase-like. | 0.920 |
Rfer_1379 | ppnP | Rfer_1379 | Rfer_2688 | Phosphoribosyltransferase. | Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.900 |
Rfer_1379 | surE | Rfer_1379 | Rfer_2782 | Phosphoribosyltransferase. | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.922 |
Rfer_1379 | upp | Rfer_1379 | Rfer_2073 | Phosphoribosyltransferase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.934 |
Rfer_1967 | Rfer_2241 | Rfer_1967 | Rfer_2241 | Beta-lactamase-like. | Pyrimidine nucleoside phosphorylase-like. | 0.836 |
Rfer_2240 | Rfer_2241 | Rfer_2240 | Rfer_2241 | Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. | Pyrimidine nucleoside phosphorylase-like. | 0.954 |
Rfer_2240 | phnN | Rfer_2240 | Rfer_0148 | Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. | Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP). | 0.900 |
Rfer_2240 | upp | Rfer_2240 | Rfer_2073 | Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.419 |
Rfer_2241 | Rfer_0734 | Rfer_2241 | Rfer_0734 | Pyrimidine nucleoside phosphorylase-like. | 5-nucleotidase. | 0.900 |
Rfer_2241 | Rfer_1379 | Rfer_2241 | Rfer_1379 | Pyrimidine nucleoside phosphorylase-like. | Phosphoribosyltransferase. | 0.920 |
Rfer_2241 | Rfer_1967 | Rfer_2241 | Rfer_1967 | Pyrimidine nucleoside phosphorylase-like. | Beta-lactamase-like. | 0.836 |
Rfer_2241 | Rfer_2240 | Rfer_2241 | Rfer_2240 | Pyrimidine nucleoside phosphorylase-like. | Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.954 |
Rfer_2241 | Rfer_3888 | Rfer_2241 | Rfer_3888 | Pyrimidine nucleoside phosphorylase-like. | Beta-lysine 5,6-aminomutase alpha subunit / D-lysine 5,6-aminomutase alpha subunit. | 0.881 |
Rfer_2241 | era | Rfer_2241 | Rfer_1744 | Pyrimidine nucleoside phosphorylase-like. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.703 |
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