Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rfer_2003 | Rfer_3590 | Rfer_2003 | Rfer_3590 | tRNA/rRNA methyltransferase (SpoU). | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.413 |
| Rfer_2003 | rlmD | Rfer_2003 | Rfer_2778 | tRNA/rRNA methyltransferase (SpoU). | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.619 |
| Rfer_2003 | trmB | Rfer_2003 | Rfer_1896 | tRNA/rRNA methyltransferase (SpoU). | Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.463 |
| Rfer_2518 | Rfer_3590 | Rfer_2518 | Rfer_3590 | Conserved hypothetical protein. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.415 |
| Rfer_2518 | rlmD | Rfer_2518 | Rfer_2778 | Conserved hypothetical protein. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.681 |
| Rfer_2518 | trmB | Rfer_2518 | Rfer_1896 | Conserved hypothetical protein. | Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.744 |
| Rfer_2779 | Rfer_2780 | Rfer_2779 | Rfer_2780 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Peptidase M23B. | 0.869 |
| Rfer_2779 | Rfer_2781 | Rfer_2779 | Rfer_2781 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | protein-L-isoaspartate O-methyltransferase. | 0.806 |
| Rfer_2779 | guaA | Rfer_2779 | Rfer_2287 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.470 |
| Rfer_2779 | rlmD | Rfer_2779 | Rfer_2778 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.655 |
| Rfer_2779 | surE | Rfer_2779 | Rfer_2782 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.774 |
| Rfer_2780 | Rfer_2779 | Rfer_2780 | Rfer_2779 | Peptidase M23B. | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.869 |
| Rfer_2780 | Rfer_2781 | Rfer_2780 | Rfer_2781 | Peptidase M23B. | protein-L-isoaspartate O-methyltransferase. | 0.864 |
| Rfer_2780 | guaA | Rfer_2780 | Rfer_2287 | Peptidase M23B. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.490 |
| Rfer_2780 | rlmD | Rfer_2780 | Rfer_2778 | Peptidase M23B. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.646 |
| Rfer_2780 | surE | Rfer_2780 | Rfer_2782 | Peptidase M23B. | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.902 |
| Rfer_2781 | Rfer_2779 | Rfer_2781 | Rfer_2779 | protein-L-isoaspartate O-methyltransferase. | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.806 |
| Rfer_2781 | Rfer_2780 | Rfer_2781 | Rfer_2780 | protein-L-isoaspartate O-methyltransferase. | Peptidase M23B. | 0.864 |
| Rfer_2781 | rlmD | Rfer_2781 | Rfer_2778 | protein-L-isoaspartate O-methyltransferase. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.596 |
| Rfer_2781 | surE | Rfer_2781 | Rfer_2782 | protein-L-isoaspartate O-methyltransferase. | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.940 |
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