Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_0121 | Rfer_2439 | Rfer_0121 | Rfer_2439 | Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | Alcohol dehydrogenase, zinc-binding. | 0.964 |
Rfer_0121 | Rfer_2865 | Rfer_0121 | Rfer_2865 | Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | Iron-containing alcohol dehydrogenase. | 0.965 |
Rfer_0121 | Rfer_2866 | Rfer_0121 | Rfer_2866 | Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.925 |
Rfer_0388 | Rfer_0455 | Rfer_0388 | Rfer_0455 | AMP-dependent synthetase and ligase. | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | 0.905 |
Rfer_0388 | Rfer_1216 | Rfer_0388 | Rfer_1216 | AMP-dependent synthetase and ligase. | Acetyl-CoA hydrolase. | 0.929 |
Rfer_0388 | Rfer_2581 | Rfer_0388 | Rfer_2581 | AMP-dependent synthetase and ligase. | Acetyl-coenzyme A synthetase. | 0.920 |
Rfer_0388 | Rfer_2698 | Rfer_0388 | Rfer_2698 | AMP-dependent synthetase and ligase. | AMP-dependent synthetase and ligase. | 0.922 |
Rfer_0388 | Rfer_2866 | Rfer_0388 | Rfer_2866 | AMP-dependent synthetase and ligase. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.939 |
Rfer_0388 | ackA | Rfer_0388 | Rfer_2975 | AMP-dependent synthetase and ligase. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.928 |
Rfer_0388 | acyP | Rfer_0388 | Rfer_1453 | AMP-dependent synthetase and ligase. | Acylphosphatase. | 0.902 |
Rfer_0455 | Rfer_0388 | Rfer_0455 | Rfer_0388 | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | AMP-dependent synthetase and ligase. | 0.905 |
Rfer_0455 | Rfer_1216 | Rfer_0455 | Rfer_1216 | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | Acetyl-CoA hydrolase. | 0.900 |
Rfer_0455 | Rfer_2581 | Rfer_0455 | Rfer_2581 | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | Acetyl-coenzyme A synthetase. | 0.905 |
Rfer_0455 | Rfer_2698 | Rfer_0455 | Rfer_2698 | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | AMP-dependent synthetase and ligase. | 0.905 |
Rfer_0455 | Rfer_2866 | Rfer_0455 | Rfer_2866 | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.908 |
Rfer_1216 | Rfer_0388 | Rfer_1216 | Rfer_0388 | Acetyl-CoA hydrolase. | AMP-dependent synthetase and ligase. | 0.929 |
Rfer_1216 | Rfer_0455 | Rfer_1216 | Rfer_0455 | Acetyl-CoA hydrolase. | Semialdehyde dehydrogenase, NAD - binding; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. | 0.900 |
Rfer_1216 | Rfer_2581 | Rfer_1216 | Rfer_2581 | Acetyl-CoA hydrolase. | Acetyl-coenzyme A synthetase. | 0.929 |
Rfer_1216 | Rfer_2698 | Rfer_1216 | Rfer_2698 | Acetyl-CoA hydrolase. | AMP-dependent synthetase and ligase. | 0.929 |
Rfer_1216 | Rfer_2866 | Rfer_1216 | Rfer_2866 | Acetyl-CoA hydrolase. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.909 |
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