STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3130Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (333 aa)    
Predicted Functional Partners:
Rfer_3129
ABC transporter related; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
 0.993
Rfer_3131
Periplasmic binding protein/LacI transcriptional regulator.
 0.990
Rfer_0438
Periplasmic binding protein/LacI transcriptional regulator.
 0.982
Rfer_0437
ABC transporter related.
 0.981
Rfer_0124
ABC transporter related.
 0.980
Rfer_0123
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.922
Rfer_0439
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.915
Rfer_1903
Periplasmic binding protein/LacI transcriptional regulator.
 
 0.891
Rfer_1901
ABC transporter related.
 
 0.871
Rfer_0125
Periplasmic binding protein/LacI transcriptional regulator.
 
 
 0.726
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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