STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3941Protein serine/threonine phosphatases. (261 aa)    
Predicted Functional Partners:
Rfer_3942
Serine/threonine protein kinase with Chase2 sensor.
 
 0.977
Rfer_3940
FHA domain containing protein.
 
 
 0.929
Rfer_1627
Serine/threonine protein kinase.
 
 
 0.869
Rfer_2728
Serine/threonine protein kinase.
 
 0.860
Rfer_2214
Dihydrolipoamide dehydrogenase.
  
 0.822
Rfer_3019
Glycine cleavage system T protein.
   
 0.726
Rfer_4101
Formyl transferase-like.
  
   0.629
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.625
Rfer_1231
Hypothetical protein.
  
 
 0.622
Rfer_2284
Putative adenylate/guanylate cyclase.
 
 
 0.617
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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