STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (495 aa)    
Predicted Functional Partners:
Asuc_0234
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: msu:MS0046 ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
 
 0.972
Asuc_0493
PFAM: carbohydrate kinase FGGY; KEGG: msu:MS0059 XylB protein.
 
  
 0.891
Asuc_0159
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: msu:MS0525 Tdh protein.
    
 0.807
Asuc_0129
PFAM: carbohydrate kinase FGGY; KEGG: msu:MS1411 XylB protein.
 
  
 0.612
Asuc_0492
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: msu:MS0060 AraC-type DNA-binding domain-containing proteins.
 
     0.563
Asuc_0121
PFAM: class II aldolase/adducin family protein; KEGG: msu:MS1979 hypothetical protein.
  
  
 0.472
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.430
Asuc_0491
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msu:MS0061 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
     
 0.429
araG
ABC transporter related; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
  
  
 0.420
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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