STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1398PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: msu:MS0806 beta-galactosidase/beta-glucuronidase. (1007 aa)    
Predicted Functional Partners:
Asuc_1901
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
 
 
 0.939
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: msu:MS2373 xylose isomerase; Belongs to the xylose isomerase family.
    
 0.822
Asuc_1397
TIGRFAM: oligosaccharide/H+ symporter, major facilitator superfamily (MFS); PFAM: proton/sugar symporter LacY; major facilitator superfamily MFS_1; KEGG: msu:MS0807 permeases of the major facilitator superfamily.
  
  
 0.809
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.752
Asuc_0086
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: msu:MS2179 fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
   
    0.716
Asuc_0149
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: msu:MS0539 alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.558
Asuc_0859
PFAM: glycoside hydrolase family 20; KEGG: msu:MS1111 Chb protein.
 
 
 0.485
Asuc_1396
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: msu:MS0808 PurR protein.
     
 0.481
Asuc_0975
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: bld:BLi04200 close homolog to BglP PTS enzyme IIBCA component; RBL02058.
  
  
 0.476
Asuc_0591
PFAM: iron-containing alcohol dehydrogenase; KEGG: msu:MS2190 alcohol dehydrogenase IV; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.444
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.