STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1467Oligogalacturonide lyase; KEGG: msu:MS1740 hypothetical protein. (387 aa)    
Predicted Functional Partners:
Asuc_1469
KEGG: msu:MS1742 hypothetical protein.
 
  
 0.980
Asuc_1473
PFAM: Ribose/galactose isomerase; KEGG: msu:MS0564 hypothetical protein.
 
     0.741
Asuc_1468
PFAM: Na+ symporter; KEGG: msu:MS1741 PutP protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.581
Asuc_1470
PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein.
 
     0.545
Asuc_2074
KEGG: vei:Veis_1858 serine/threonine-protein kinase.
 
 
   0.528
Asuc_1475
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: msu:MS0562 IclR protein.
 
   
 0.524
Asuc_0457
Mannitol repressor, MtlR; PFAM: Mannitol repressor; KEGG: msu:MS0409 mannitol operon repressor.
  
     0.483
Asuc_1472
PFAM: PfkB domain protein; KEGG: msu:MS0565 sugar kinases, ribokinase family.
 
   
 0.465
Asuc_2010
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.461
Asuc_2054
PFAM: Di-haem cytochrome c peroxidase; KEGG: msu:MS0223 cytochrome c peroxidase.
  
   0.416
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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