HCAG_05447 protein (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCAG_05447

Uncharacterized protein. (229 aa)

Predicted Functional Partners:

HCAG_05446

0.938

HCAG_00077

0.795

COG6

0.774

HCAG_03663

0.632

HCAG_06588

0.631

HCAG_06538

0.487

HCAG_05461

0.430

HCAG_03222

0.408

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COG6	HCAG_00077	A6R6L9	A6QRS1	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	Uncharacterized protein.	0.998
COG6	HCAG_03663	A6R6L9	A6R205	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	Cog4 domain-containing protein.	0.995
COG6	HCAG_05446	A6R6L9	A6R738	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	Uncharacterized protein.	0.662
COG6	HCAG_05447	A6R6L9	A6R739	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	Uncharacterized protein.	0.774
COG6	HCAG_06588	A6R6L9	A6R8E7	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	Uncharacterized protein.	0.998
HCAG_00077	COG6	A6QRS1	A6R6L9	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	0.998
HCAG_00077	HCAG_03663	A6QRS1	A6R205	Uncharacterized protein.	Cog4 domain-containing protein.	0.997
HCAG_00077	HCAG_05446	A6QRS1	A6R738	Uncharacterized protein.	Uncharacterized protein.	0.693
HCAG_00077	HCAG_05447	A6QRS1	A6R739	Uncharacterized protein.	Uncharacterized protein.	0.795
HCAG_00077	HCAG_06588	A6QRS1	A6R8E7	Uncharacterized protein.	Uncharacterized protein.	0.997
HCAG_03222	HCAG_05446	A6R0R5	A6R738	Uncharacterized protein.	Uncharacterized protein.	0.408
HCAG_03222	HCAG_05447	A6R0R5	A6R739	Uncharacterized protein.	Uncharacterized protein.	0.408
HCAG_03663	COG6	A6R205	A6R6L9	Cog4 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	0.995
HCAG_03663	HCAG_00077	A6R205	A6QRS1	Cog4 domain-containing protein.	Uncharacterized protein.	0.997
HCAG_03663	HCAG_05446	A6R205	A6R738	Cog4 domain-containing protein.	Uncharacterized protein.	0.632
HCAG_03663	HCAG_05447	A6R205	A6R739	Cog4 domain-containing protein.	Uncharacterized protein.	0.632
HCAG_03663	HCAG_06588	A6R205	A6R8E7	Cog4 domain-containing protein.	Uncharacterized protein.	0.998
HCAG_05446	COG6	A6R738	A6R6L9	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	0.662
HCAG_05446	HCAG_00077	A6R738	A6QRS1	Uncharacterized protein.	Uncharacterized protein.	0.693
HCAG_05446	HCAG_03222	A6R738	A6R0R5	Uncharacterized protein.	Uncharacterized protein.	0.408