STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msp_1111Conserved hypothetical membrane-spanning protein. (201 aa)    
Predicted Functional Partners:
cbiO2
CbiO2; Putative ABC-type cobalt transport system, ATP-binding protein CbiO 2; COG1123, COG1122, cd00267.
 
 
 0.993
Msp_1113
Conserved hypothetical membrane-spanning protein; Related to ABC-type cobalt transport system, permease protein CbiQ; predicted membrane protein.
 
 
 0.991
cbiQ1
CbiQ1; ABC-type cobalt transport system, permease protein CbiQ 1.
  
 
 0.857
cbiQ2
CbiQ2; Putative ABC-type Cobalt transport system, permease protein CbiQ 2; COG0619.
  
 
 0.857
cbiO1
CbiO1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
 0.838
thiD
ThiD; Putative phosphomethylpyrimidine kinase; COG0351, cd01169.
 
   
 0.543
valS
ValS; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily.
 
    0.463
Msp_1114
Predicted dTDP-D-glucose 4,6-dehydratase; COG1088, pfam01370.
       0.407
Your Current Organism:
Methanosphaera stadtmanae
NCBI taxonomy Id: 339860
Other names: M. stadtmanae DSM 3091, Methanosphaera stadtmanae ATCC 43021, Methanosphaera stadtmanae DSM 3091, Methanosphaera stadtmanae MCB-3, Methanosphaera stadtmanae str. DSM 3091, Methanosphaera stadtmanae strain DSM 3091
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