Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Msp_0634 | Msp_1282 | Predicted prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | Predicted protein kinase; COG0661, pfam03109. | 0.480 |
Msp_0700 | Msp_1282 | Predicted phosphatase; COG0546, pfam00702. | Predicted protein kinase; COG0661, pfam03109. | 0.451 |
Msp_1282 | Msp_0634 | Predicted protein kinase; COG0661, pfam03109. | Predicted prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | 0.480 |
Msp_1282 | Msp_0700 | Predicted protein kinase; COG0661, pfam03109. | Predicted phosphatase; COG0546, pfam00702. | 0.451 |
Msp_1282 | Msp_1283 | Predicted protein kinase; COG0661, pfam03109. | Hypothetical membrane-spanning protein. | 0.503 |
Msp_1282 | Msp_1424 | Predicted protein kinase; COG0661, pfam03109. | Predicted phosphopantothenoylcysteine synthetase/decarboxylase; COG0452, pfam02441, pfam04127. | 0.468 |
Msp_1283 | Msp_1282 | Hypothetical membrane-spanning protein. | Predicted protein kinase; COG0661, pfam03109. | 0.503 |
Msp_1424 | Msp_1282 | Predicted phosphopantothenoylcysteine synthetase/decarboxylase; COG0452, pfam02441, pfam04127. | Predicted protein kinase; COG0661, pfam03109. | 0.468 |